Input description

The input data should meet the following format:

Columns	Description
peptide	8mer ~ 11mer peptides (e.g. DSERFFIRY)
MHC	MHC class I molecules (e.g. A*01:01), MHC is shown in /DLpMHCI_master/data/HLA.xlsx

Implementation

It is noted that the following commands should be implemented under /DLpMHCI_master/src. You can implement the code as following:

python predict.py -path=[input path] 

For example:

python predict.py -path="../data/samples.csv"

Output description

The output file is shown as /DLpMHCI_master/data/result.csv. The description of output is shown as follows:

Columns	Description
Peptide	8mer ~ 11mer peptides
MHC	MHC class I molecules
Bind	Whether the peptide binds to MHC (1 indicates binding, 0 indicates non binding)
Score	Binding fraction of peptide to MHC