Use this software
WARNING
This project only provides programs that can run on Linux.
# Input description
The input data should meet the following format:
| Columns | Description |
|---|---|
| peptide | 8mer ~ 11mer peptides (e.g. DSERFFIRY) |
| MHC | MHC class I molecules (e.g. A01:01), MHC is shown in /DLpMHCI/data/HLA.xlsx |
# Implementation
It is noted that the following commands should be implemented under /DLpMHCI/predict. You can implement the code as following:
cd DLpMHCI/predict
./predict -path=[input path]
For example:
cd DLpMHCI/predict
./predict -path="../data/samples.csv"
# Output description
The output file is shown as /DLpMHCI/data/result.csv. The description of output is shown as follows:
| Columns | Description |
|---|---|
| Peptide | 8mer ~ 11mer peptides |
| MHC | MHC class I molecules |
| Bind | Whether the peptide binds to MHC (1 indicates binding, 0 indicates non binding) |
| Score | Binding fraction of peptide to MHC |